Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BLCA rs2814185 chr10:133940568 A/G 1.48E-5 394 11.47 17.87 18.95 KM Plot
BLCA rs2814186 chr10:133940025 G/T 1.48E-5 394 11.47 17.87 18.95 KM Plot
BLCA rs2818393 chr10:133942629 A/G 1.46E-6 405 11.47 17.87 18.83 KM Plot
BLCA rs2818395 chr10:133942308 A/G 5.19E-6 395 11.47 17.87 18.95 KM Plot
BLCA rs28472559 chr5:131581611 G/A 2.21E-6 404 21.32 17.67 14.47 KM Plot
BLCA rs28566830 chr4:41901831 G/A 0 391 16.93 20.07 0.67 KM Plot
BLCA rs2940 chr4:16258155 G/A 2.68E-5 391 16.97 19.33 10.93 KM Plot
BLCA rs334902 chr5:131586559 C/G 1.36E-5 398 21.37 17.87 14.47 KM Plot
BLCA rs34012000 chr5:3536248 T/C 1.3E-5 401 17.23 19.58 4.37 KM Plot
BLCA rs34098513 chr5:3486403 G/C 1.04E-5 403 17.4 19.4 4.37 KM Plot
BLCA rs34227872 chr5:3523512 G/T 9.79E-6 403 17.4 20.07 4.37 KM Plot
BLCA rs34299253 chr5:3510569 T/C 9.1E-6 404 17.4 19.92 4.37 KM Plot
BLCA rs34428582 chr5:3503596 A/G 9.1E-6 405 17.23 19.92 4.37 KM Plot
BLCA rs34463782 chr8:70077016 A/C 0 400 17.98 16.13 0.63 KM Plot
BLCA rs34560950 chr5:3512343 G/A 9.42E-6 404 17.4 19.77 4.37 KM Plot